IL_8VIO_178

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GGG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VIO_178 not in the Motif Atlas

Geometric match to IL_4LFB_053

Geometric discrepancy: 0.3637

The information below is about IL_4LFB_053

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_58310.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

25

Unit IDs

8VIO|1|a|G|1234
8VIO|1|a|G|1235
8VIO|1|a|G|1236
*
8VIO|1|a|C|1264
8VIO|1|a|U|1265

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S3

Chain p

30S ribosomal protein S10

Chain u

30S Ribosomal Protein S14