IL_8VIO_180

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CGAUG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VIO_180 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.3187

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8VIO|1|a|C|1240
8VIO|1|a|G|1241
8VIO|1|a|A|1242
8VIO|1|a|U|1243
8VIO|1|a|G|1244
*
8VIO|1|a|U|1253
8VIO|1|a|G|1254
8VIO|1|a|G|1255
8VIO|1|a|A|1256
8VIO|1|a|G|1257

Current chains

Chain a

16S ribosomal RNA

Nearby chains