IL_8VIO_182
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VIO_182 not in the Motif Atlas
- Homologous match to IL_4LFB_068
- Geometric discrepancy: 0.1455
- The information below is about IL_4LFB_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25873.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8VIO|1|a|G|1384
8VIO|1|a|C|1385
8VIO|1|a|C|1386
8VIO|1|a|C|1387
*
8VIO|1|a|G|1481
8VIO|1|a|U|1482
8VIO|1|a|A|1483
8VIO|1|a|A|1484
8VIO|1|a|C|1485
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Conserved domain protein
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: