IL_8VIO_185

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CAU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VIO_185 not in the Motif Atlas

Homologous match to IL_5J7L_061

Geometric discrepancy: 0.1275

The information below is about IL_5J7L_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8VIO|1|a|C|1395
8VIO|1|a|A|1396
8VIO|1|a|U|1397
*
8VIO|1|a|G|1470
8VIO|1|a|G|1471
8VIO|1|a|G|1472

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain 1

Conserved domain protein

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain s

30S ribosomal protein S12