IL_8VIO_189

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VIO_189 not in the Motif Atlas

Homologous match to IL_4LFB_063

Geometric discrepancy: 0.1419

The information below is about IL_4LFB_063

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8VIO|1|a|G|1418
8VIO|1|a|C|1419
8VIO|1|a|C|1420
*
8VIO|1|a|G|1448
8VIO|1|a|U|1449
8VIO|1|a|C|1450

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L19

Chain z

30S ribosomal protein S20