IL_8VIO_190

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UGGC*GAG

Length

7 nucleotides

Bulged bases

8VIO|1|a|G|1425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VIO_190 not in the Motif Atlas

Geometric match to IL_8VTW_011

Geometric discrepancy: 0.1635

The information below is about IL_8VTW_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8VIO|1|a|U|1423
8VIO|1|a|G|1424
8VIO|1|a|G|1425
8VIO|1|a|C|1426
*
8VIO|1|a|G|1443
8VIO|1|a|A|1444
8VIO|1|a|G|1445

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L19

Chain z

30S ribosomal protein S20