Loop IL_8VK0

3D structure

PDB id: 8VK0 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å

Loop

Sequence: CCAGGAGGUUGGCUUAGAAGCAGCCACCCUUGAAAG*CACUGG
Length: 42 nucleotides
Bulged bases: 8VK0|1|A|A|1175, 8VK0|1|A|G|1177, 8VK0|1|A|U|1179, 8VK0|1|A|U|1183, 8VK0|1|A|U|1184, 8VK0|1|A|A|1188, 8VK0|1|A|A|1195, 8VK0|1|A|C|1196, 8VK0|1|A|C|1197, 8VK0|1|A|C|1198, 8VK0|1|A|U|1199, 8VK0|1|A|G|1201
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8VK0|1|A|C|1170
8VK0|1|A|C|1171
8VK0|1|A|A|1172
8VK0|1|A|G|1173
8VK0|1|A|G|1174
8VK0|1|A|A|1175
8VK0|1|A|G|1176
8VK0|1|A|G|1177
8VK0|1|A|U|1178
8VK0|1|A|U|1179
8VK0|1|A|G|1180
8VK0|1|A|G|1181
8VK0|1|A|C|1182
8VK0|1|A|U|1183
8VK0|1|A|U|1184
8VK0|1|A|A|1185
8VK0|1|A|G|1186
8VK0|1|A|A|1187
8VK0|1|A|A|1188
8VK0|1|A|G|1189
8VK0|1|A|C|1190
8VK0|1|A|A|1191
8VK0|1|A|G|1192
8VK0|1|A|C|1193
8VK0|1|A|C|1194
8VK0|1|A|A|1195
8VK0|1|A|C|1196
8VK0|1|A|C|1197
8VK0|1|A|C|1198
8VK0|1|A|U|1199
8VK0|1|A|U|1200
8VK0|1|A|G|1201
8VK0|1|A|A|1202
8VK0|1|A|A|1203
8VK0|1|A|A|1204
8VK0|1|A|G|1205
*
8VK0|1|A|C|1220
8VK0|1|A|A|1221
8VK0|1|A|C|1222
8VK0|1|A|U|1223
8VK0|1|A|G|1224
8VK0|1|A|G|1225

Current chains

Chain A: 23S ribosomal RNA

Nearby chains

Chain 4: GTPase HflX
Chain I: 50S ribosomal protein L10
Chain J: 50S ribosomal protein L11
Chain f: 50S ribosomal protein L36

IL_8VK0_047