IL_8VK0_059

3D structure

PDB id

8VK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CAGCGGUACUAAC*GGACCUUCGUUG

Length

25 nucleotides

Bulged bases

8VK0|1|A|C|1617, 8VK0|1|A|U|1624

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VK0|1|A|C|1545
8VK0|1|A|A|1546
8VK0|1|A|G|1547
8VK0|1|A|C|1548
8VK0|1|A|G|1549
8VK0|1|A|G|1550
8VK0|1|A|U|1551
8VK0|1|A|A|1552
8VK0|1|A|C|1553
8VK0|1|A|U|1554
8VK0|1|A|A|1555
8VK0|1|A|A|1556
8VK0|1|A|C|1557
*
8VK0|1|A|G|1614
8VK0|1|A|G|1615
8VK0|1|A|A|1616
8VK0|1|A|C|1617
8VK0|1|A|C|1618
8VK0|1|A|U|1619
8VK0|1|A|U|1620
8VK0|1|A|C|1621
8VK0|1|A|G|1622
8VK0|1|A|U|1623
8VK0|1|A|U|1624
8VK0|1|A|G|1625

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2