IL_8VK0_084

3D structure

PDB id

8VK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

UUAAG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VK0_084 not in the Motif Atlas

Homologous match to IL_9DFE_074

Geometric discrepancy: 0.2175

The information below is about IL_9DFE_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

UAA/GAN with extra stack

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8VK0|1|A|U|2068
8VK0|1|A|U|2069
8VK0|1|A|A|2070
8VK0|1|A|A|2071
8VK0|1|A|G|2072
*
8VK0|1|A|U|2111
8VK0|1|A|U|2112
8VK0|1|A|A|2113
8VK0|1|A|A|2114
8VK0|1|A|G|2115

Current chains

Chain A

23S ribosomal RNA

Nearby chains