IL_8VK0_088
3D structure
- PDB id
- 8VK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 8VK0|1|A|A|2162, 8VK0|1|A|U|2168
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VK0_088 not in the Motif Atlas
- Homologous match to IL_5J7L_319
- Geometric discrepancy: 0.1141
- The information below is about IL_5J7L_319
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
8VK0|1|A|C|2158
8VK0|1|A|G|2159
8VK0|1|A|A|2160
8VK0|1|A|A|2161
8VK0|1|A|A|2162
8VK0|1|A|U|2163
8VK0|1|A|U|2164
8VK0|1|A|C|2165
8VK0|1|A|C|2166
8VK0|1|A|U|2167
8VK0|1|A|U|2168
8VK0|1|A|G|2169
*
8VK0|1|A|C|2185
8VK0|1|A|C|2186
8VK0|1|A|U|2187
8VK0|1|A|G|2188
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- GTPase HflX
- Chain C
- 50S ribosomal protein L2
Coloring options: