IL_8VK0_095

3D structure

PDB id

8VK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

UUUGUGUAGGAUAGGUGGGAGACUGUGAAGC*GUGGAGUCGUUGUUGAAAUACCACUCUGA

Length

60 nucleotides

Bulged bases

8VK0|1|A|U|2334, 8VK0|1|A|G|2339, 8VK0|1|A|G|2348, 8VK0|1|A|A|2349, 8VK0|1|A|U|2353, 8VK0|1|A|G|2354, 8VK0|1|A|U|2355, 8VK0|1|A|A|2381, 8VK0|1|A|U|2386, 8VK0|1|A|U|2387, 8VK0|1|A|G|2388, 8VK0|1|A|G|2391, 8VK0|1|A|A|2392, 8VK0|1|A|A|2394, 8VK0|1|A|U|2401

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VK0|1|A|U|2330
8VK0|1|A|U|2331
8VK0|1|A|U|2332
8VK0|1|A|G|2333
8VK0|1|A|U|2334
8VK0|1|A|G|2335
8VK0|1|A|U|2336
8VK0|1|A|A|2337
8VK0|1|A|G|2338
8VK0|1|A|G|2339
8VK0|1|A|A|2340
8VK0|1|A|U|2341
8VK0|1|A|A|2342
8VK0|1|A|G|2343
8VK0|1|A|G|2344
8VK0|1|A|U|2345
8VK0|1|A|G|2346
8VK0|1|A|G|2347
8VK0|1|A|G|2348
8VK0|1|A|A|2349
8VK0|1|A|G|2350
8VK0|1|A|A|2351
8VK0|1|A|C|2352
8VK0|1|A|U|2353
8VK0|1|A|G|2354
8VK0|1|A|U|2355
8VK0|1|A|G|2356
8VK0|1|A|A|2357
8VK0|1|A|A|2358
8VK0|1|A|G|2359
8VK0|1|A|C|2360
*
8VK0|1|A|G|2377
8VK0|1|A|U|2378
8VK0|1|A|G|2379
8VK0|1|A|G|2380
8VK0|1|A|A|2381
8VK0|1|A|G|2382
8VK0|1|A|U|2383
8VK0|1|A|C|2384
8VK0|1|A|G|2385
8VK0|1|A|U|2386
8VK0|1|A|U|2387
8VK0|1|A|G|2388
8VK0|1|A|U|2389
8VK0|1|A|U|2390
8VK0|1|A|G|2391
8VK0|1|A|A|2392
8VK0|1|A|A|2393
8VK0|1|A|A|2394
8VK0|1|A|U|2395
8VK0|1|A|A|2396
8VK0|1|A|C|2397
8VK0|1|A|C|2398
8VK0|1|A|A|2399
8VK0|1|A|C|2400
8VK0|1|A|U|2401
8VK0|1|A|C|2402
8VK0|1|A|U|2403
8VK0|1|A|G|2404
8VK0|1|A|A|2405

Current chains

Chain A

23S ribosomal RNA

Nearby chains