IL_8VKI_012

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUAC*GAGUGAAAGAGUAC

Length

18 nucleotides

Bulged bases

8VKI|1|A|G|591, 8VKI|1|A|A|595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKI_012 not in the Motif Atlas

Geometric match to IL_5TBW_014

Geometric discrepancy: 0.1305

The information below is about IL_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8VKI|1|A|G|569
8VKI|1|A|U|570
8VKI|1|A|A|571
8VKI|1|A|C|572
*
8VKI|1|A|G|583
8VKI|1|A|A|584
8VKI|1|A|G|585
8VKI|1|A|U|586
8VKI|1|A|G|587
8VKI|1|A|A|588
8VKI|1|A|A|589
8VKI|1|A|A|590
8VKI|1|A|G|591
8VKI|1|A|A|592
8VKI|1|A|G|593
8VKI|1|A|U|594
8VKI|1|A|A|595
8VKI|1|A|C|596

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S Ribosomal Protein L22

Chain V

50S ribosomal protein L24