IL_8VKI_041
3D structure
- PDB id
- 8VKI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GGAAAAG*CGAUAAUGUAGCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 8VKI|1|A|U|1248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VKI_041 not in the Motif Atlas
- Homologous match to IL_5J7L_281
- Geometric discrepancy: 0.1739
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8VKI|1|A|G|1142
8VKI|1|A|G|1143
8VKI|1|A|A|1144
8VKI|1|A|A|1145
8VKI|1|A|A|1146
8VKI|1|A|A|1147
8VKI|1|A|G|1148
*
8VKI|1|A|C|1242
8VKI|1|A|G|1243
8VKI|1|A|A|1244
8VKI|1|A|U|1245
8VKI|1|A|A|1246
8VKI|1|A|A|1247
8VKI|1|A|U|1248
8VKI|1|A|G|1249
8VKI|1|A|U|1250
8VKI|1|A|A|1251
8VKI|1|A|G|1252
8VKI|1|A|C|1253
8VKI|1|A|G|1254
8VKI|1|A|G|1255
8VKI|1|A|G|1256
8VKI|1|A|G|1257
8VKI|1|A|C|1258
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S Ribosomal Protein L37
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 50S ribosomal protein L3
- Chain K
- 50S Ribosomal Protein L13
- Chain N
- Large ribosomal subunit protein uL16
- Chain f
- 50S ribosomal protein L36
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