IL_8VKI_060

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

AG*CAUAUAU

Length

9 nucleotides

Bulged bases

8VKI|1|A|U|1730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKI_060 not in the Motif Atlas

Homologous match to IL_9DFE_060

Geometric discrepancy: 0.4159

The information below is about IL_9DFE_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46086.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

1

Unit IDs

8VKI|1|A|A|1702
8VKI|1|A|G|1703
*
8VKI|1|A|C|1726
8VKI|1|A|A|1727
8VKI|1|A|U|1728
8VKI|1|A|A|1729
8VKI|1|A|U|1730
8VKI|1|A|A|1731
8VKI|1|A|U|1732

Current chains

Chain A

23S ribosomal RNA

Nearby chains