IL_8VKI_069

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UGUAAG*CCCAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKI_069 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.3272

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8VKI|1|A|U|1937
8VKI|1|A|G|1938
8VKI|1|A|U|1939
8VKI|1|A|A|1940
8VKI|1|A|A|1941
8VKI|1|A|G|1942
*
8VKI|1|A|C|1952
8VKI|1|A|C|1953
8VKI|1|A|C|1954
8VKI|1|A|A|1955
8VKI|1|A|A|1956
8VKI|1|A|G|1957

Current chains

Chain A

23S ribosomal RNA

Nearby chains