IL_8VKI_080

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUUUGUGUAGGAUAGGUG*CACUCUGAU

Length

27 nucleotides

Bulged bases

8VKI|1|A|U|2334, 8VKI|1|A|G|2335, 8VKI|1|A|U|2336, 8VKI|1|A|A|2337, 8VKI|1|A|G|2338, 8VKI|1|A|G|2339, 8VKI|1|A|A|2340, 8VKI|1|A|U|2341, 8VKI|1|A|A|2342

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKI|1|A|G|2329
8VKI|1|A|U|2330
8VKI|1|A|U|2331
8VKI|1|A|U|2332
8VKI|1|A|G|2333
8VKI|1|A|U|2334
8VKI|1|A|G|2335
8VKI|1|A|U|2336
8VKI|1|A|A|2337
8VKI|1|A|G|2338
8VKI|1|A|G|2339
8VKI|1|A|A|2340
8VKI|1|A|U|2341
8VKI|1|A|A|2342
8VKI|1|A|G|2343
8VKI|1|A|G|2344
8VKI|1|A|U|2345
8VKI|1|A|G|2346
*
8VKI|1|A|C|2398
8VKI|1|A|A|2399
8VKI|1|A|C|2400
8VKI|1|A|U|2401
8VKI|1|A|C|2402
8VKI|1|A|U|2403
8VKI|1|A|G|2404
8VKI|1|A|A|2405
8VKI|1|A|U|2406

Current chains

Chain A

23S ribosomal RNA

Nearby chains