IL_8VKI_081

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGAGA*UCGUUGUUGAAAUAC

Length

20 nucleotides

Bulged bases

8VKI|1|A|G|2348, 8VKI|1|A|U|2386, 8VKI|1|A|G|2388, 8VKI|1|A|U|2389, 8VKI|1|A|A|2393, 8VKI|1|A|A|2394, 8VKI|1|A|U|2395

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKI|1|A|G|2347
8VKI|1|A|G|2348
8VKI|1|A|A|2349
8VKI|1|A|G|2350
8VKI|1|A|A|2351
*
8VKI|1|A|U|2383
8VKI|1|A|C|2384
8VKI|1|A|G|2385
8VKI|1|A|U|2386
8VKI|1|A|U|2387
8VKI|1|A|G|2388
8VKI|1|A|U|2389
8VKI|1|A|U|2390
8VKI|1|A|G|2391
8VKI|1|A|A|2392
8VKI|1|A|A|2393
8VKI|1|A|A|2394
8VKI|1|A|U|2395
8VKI|1|A|A|2396
8VKI|1|A|C|2397

Current chains

Chain A

23S ribosomal RNA

Nearby chains