IL_8VKI_084
3D structure
- PDB id
- 8VKI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CAA*UGUUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VKI_084 not in the Motif Atlas
- Homologous match to IL_9DFE_088
- Geometric discrepancy: 0.3586
- The information below is about IL_9DFE_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14250.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 10
Unit IDs
8VKI|1|A|C|2521
8VKI|1|A|A|2522
8VKI|1|A|A|2523
*
8VKI|1|A|U|2541
8VKI|1|A|G|2542
8VKI|1|A|U|2543
8VKI|1|A|U|2544
8VKI|1|A|G|2545
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 50S Ribosomal Protein L5
- Chain P
- 50S Ribosomal Protein L18
Coloring options: