IL_8VKI_092
3D structure
- PDB id
- 8VKI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VKI_092 not in the Motif Atlas
- Homologous match to IL_5J7L_338
- Geometric discrepancy: 0.1305
- The information below is about IL_5J7L_338
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8VKI|1|A|C|2690
8VKI|1|A|C|2691
8VKI|1|A|A|2692
8VKI|1|A|A|2693
8VKI|1|A|G|2694
*
8VKI|1|A|C|2704
8VKI|1|A|G|2705
8VKI|1|A|A|2706
8VKI|1|A|C|2707
8VKI|1|A|G|2708
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- GTPase HflX
- Chain N
- Large ribosomal subunit protein uL16
- Chain f
- 50S ribosomal protein L36
Coloring options: