IL_8VKI_109
3D structure
- PDB id
- 8VKI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GGAAACG*CUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VKI_109 not in the Motif Atlas
- Homologous match to IL_8P9A_365
- Geometric discrepancy: 0.5682
- The information below is about IL_8P9A_365
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_41504.1
- Basepair signature
- cWW-tSH-L-R-L-tHH-cWW
- Number of instances in this motif group
- 5
Unit IDs
8VKI|1|B|G|24
8VKI|1|B|G|25
8VKI|1|B|A|26
8VKI|1|B|A|27
8VKI|1|B|A|28
8VKI|1|B|C|29
8VKI|1|B|G|30
*
8VKI|1|B|C|56
8VKI|1|B|U|57
8VKI|1|B|A|58
8VKI|1|B|A|59
8VKI|1|B|G|60
8VKI|1|B|C|61
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain F
- 50S Ribosomal Protein L5
- Chain P
- 50S Ribosomal Protein L18
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