IL_8VKW_020

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

UUAAC*GGUAG

Length

10 nucleotides

Bulged bases

8VKW|1|A|U|714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKW_020 not in the Motif Atlas

Homologous match to IL_9DFE_014

Geometric discrepancy: 0.207

The information below is about IL_9DFE_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8VKW|1|A|U|699
8VKW|1|A|U|700
8VKW|1|A|A|701
8VKW|1|A|A|702
8VKW|1|A|C|703
*
8VKW|1|A|G|712
8VKW|1|A|G|713
8VKW|1|A|U|714
8VKW|1|A|A|715
8VKW|1|A|G|716

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S Ribosomal Protein L4

Chain M

50S ribosomal protein L15