IL_8VKW_037
3D structure
- PDB id
- 8VKW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.44 Å
Loop
- Sequence
- GGC*GUGC
- Length
- 7 nucleotides
- Bulged bases
- 8VKW|1|A|G|1085
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VKW_037 not in the Motif Atlas
- Geometric match to IL_3GM7_005
- Geometric discrepancy: 0.1718
- The information below is about IL_3GM7_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.4
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 215
Unit IDs
8VKW|1|A|G|1066
8VKW|1|A|G|1067
8VKW|1|A|C|1068
*
8VKW|1|A|G|1083
8VKW|1|A|U|1084
8VKW|1|A|G|1085
8VKW|1|A|C|1086
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L30
- Chain 3
- 50S Ribosomal Protein L37
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain N
- Large ribosomal subunit protein uL16
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