IL_8VKW_047

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

UCGCGAAGACAA*UCAAGUG

Length

19 nucleotides

Bulged bases

8VKW|1|A|A|1164, 8VKW|1|A|G|1165, 8VKW|1|A|A|1228

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKW|1|A|U|1158
8VKW|1|A|C|1159
8VKW|1|A|G|1160
8VKW|1|A|C|1161
8VKW|1|A|G|1162
8VKW|1|A|A|1163
8VKW|1|A|A|1164
8VKW|1|A|G|1165
8VKW|1|A|A|1166
8VKW|1|A|C|1167
8VKW|1|A|A|1168
8VKW|1|A|A|1169
*
8VKW|1|A|U|1226
8VKW|1|A|C|1227
8VKW|1|A|A|1228
8VKW|1|A|A|1229
8VKW|1|A|G|1230
8VKW|1|A|U|1231
8VKW|1|A|G|1232

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain W

50S ribosomal protein L25