IL_8VKW_060

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CAGCGGUACUAAC*GGACCUUCGUUG

Length

25 nucleotides

Bulged bases

8VKW|1|A|U|1619, 8VKW|1|A|U|1620

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKW|1|A|C|1545
8VKW|1|A|A|1546
8VKW|1|A|G|1547
8VKW|1|A|C|1548
8VKW|1|A|G|1549
8VKW|1|A|G|1550
8VKW|1|A|U|1551
8VKW|1|A|A|1552
8VKW|1|A|C|1553
8VKW|1|A|U|1554
8VKW|1|A|A|1555
8VKW|1|A|A|1556
8VKW|1|A|C|1557
*
8VKW|1|A|G|1614
8VKW|1|A|G|1615
8VKW|1|A|A|1616
8VKW|1|A|C|1617
8VKW|1|A|C|1618
8VKW|1|A|U|1619
8VKW|1|A|U|1620
8VKW|1|A|C|1621
8VKW|1|A|G|1622
8VKW|1|A|U|1623
8VKW|1|A|U|1624
8VKW|1|A|G|1625

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2