IL_8VKW_088

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

8VKW|1|A|A|2162, 8VKW|1|A|U|2168, 8VKW|1|A|U|2187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKW_088 not in the Motif Atlas

Homologous match to IL_5J7L_319

Geometric discrepancy: 0.1979

The information below is about IL_5J7L_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

8VKW|1|A|C|2158
8VKW|1|A|G|2159
8VKW|1|A|A|2160
8VKW|1|A|A|2161
8VKW|1|A|A|2162
8VKW|1|A|U|2163
8VKW|1|A|U|2164
8VKW|1|A|C|2165
8VKW|1|A|C|2166
8VKW|1|A|U|2167
8VKW|1|A|U|2168
8VKW|1|A|G|2169
*
8VKW|1|A|C|2185
8VKW|1|A|C|2186
8VKW|1|A|U|2187
8VKW|1|A|G|2188

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

GTPase HflX