IL_8VKW_095

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CUC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKW_095 not in the Motif Atlas

Geometric match to IL_8C3A_120

Geometric discrepancy: 0.2069

The information below is about IL_8C3A_120

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8VKW|1|A|C|2320
8VKW|1|A|U|2321
8VKW|1|A|C|2322
*
8VKW|1|A|G|2413
8VKW|1|A|G|2414
8VKW|1|A|G|2415

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9