IL_8VKW_120

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

UUAC*GAA

Length

7 nucleotides

Bulged bases

8VKW|1|B|A|4

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKW_120 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.3157

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8VKW|1|B|U|2
8VKW|1|B|U|3
8VKW|1|B|A|4
8VKW|1|B|C|5
*
8VKW|1|B|G|113
8VKW|1|B|A|114
8VKW|1|B|A|115

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain P

50S Ribosomal Protein L18