IL_8VL1_072

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

8VL1|1|a|A|504, 8VL1|1|a|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VL1_072 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.0676

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

8VL1|1|a|G|481
8VL1|1|a|A|482
8VL1|1|a|A|483
8VL1|1|a|C|484
*
8VL1|1|a|G|496
8VL1|1|a|A|497
8VL1|1|a|G|498
8VL1|1|a|U|499
8VL1|1|a|G|500
8VL1|1|a|A|501
8VL1|1|a|A|502
8VL1|1|a|A|503
8VL1|1|a|A|504
8VL1|1|a|A|505
8VL1|1|a|G|506
8VL1|1|a|A|507
8VL1|1|a|A|508
8VL1|1|a|C|509

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 3

50S ribosomal protein L24