IL_8VL1_084

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8VL1|1|a|U|846, 8VL1|1|a|U|931

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VL1_084 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.1161

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

8VL1|1|a|A|844
8VL1|1|a|A|845
8VL1|1|a|U|846
8VL1|1|a|U|847
8VL1|1|a|C|848
*
8VL1|1|a|G|930
8VL1|1|a|U|931
8VL1|1|a|U|932
8VL1|1|a|A|933
8VL1|1|a|U|934

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L30