IL_8VL1_114

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UG*CAUCAG

Length

8 nucleotides

Bulged bases

8VL1|1|a|U|1584

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VL1_114 not in the Motif Atlas

Geometric match to IL_5J7L_294

Geometric discrepancy: 0.2781

The information below is about IL_5J7L_294

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87211.1

Basepair signature

cWW-cSW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8VL1|1|a|U|1415
8VL1|1|a|G|1416
*
8VL1|1|a|C|1582
8VL1|1|a|A|1583
8VL1|1|a|U|1584
8VL1|1|a|C|1585
8VL1|1|a|A|1586
8VL1|1|a|G|1587

Current chains

Chain a

23S rRNA

Nearby chains