IL_8VL1_148

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGGAG*CGACCUUGAAAUACC

Length

20 nucleotides

Bulged bases

8VL1|1|a|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VL1|1|a|G|2123
8VL1|1|a|G|2124
8VL1|1|a|G|2125
8VL1|1|a|A|2126
8VL1|1|a|G|2127
*
8VL1|1|a|C|2161
8VL1|1|a|G|2162
8VL1|1|a|A|2163
8VL1|1|a|C|2164
8VL1|1|a|C|2165
8VL1|1|a|U|2166
8VL1|1|a|U|2167
8VL1|1|a|G|2168
8VL1|1|a|A|2169
8VL1|1|a|A|2170
8VL1|1|a|A|2171
8VL1|1|a|U|2172
8VL1|1|a|A|2173
8VL1|1|a|C|2174
8VL1|1|a|C|2175

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA