IL_8VL1_149

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8VL1|1|a|U|2131, 8VL1|1|a|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VL1_149 not in the Motif Atlas

Geometric match to IL_5J7L_330

Geometric discrepancy: 0.3002

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8VL1|1|a|C|2129
8VL1|1|a|U|2130
8VL1|1|a|U|2131
8VL1|1|a|U|2132
8VL1|1|a|G|2133
8VL1|1|a|A|2134
8VL1|1|a|A|2135
8VL1|1|a|G|2136
*
8VL1|1|a|U|2155
8VL1|1|a|G|2156
8VL1|1|a|G|2157
8VL1|1|a|A|2158
8VL1|1|a|G|2159

Current chains

Chain a

23S rRNA

Nearby chains