IL_8VM8_001

3D structure

PDB id

8VM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of coxsackievirus B3 RNA replication element sD-loop mutant in complex with Fab BL3-6

Experimental method

X-RAY DIFFRACTION

Resolution

1.54 Å

Loop

Sequence

AAAC*GUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AAAC,GUUU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VM8_001 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2336

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

8VM8|1|R|A|5
8VM8|1|R|A|6
8VM8|1|R|A|7
8VM8|1|R|C|8
*
8VM8|1|R|G|86
8VM8|1|R|U|87
8VM8|1|R|U|88
8VM8|1|R|U|89

Current chains

Chain R

RNA (93-MER)

Nearby chains