IL_8VOO_021

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

8VOO|1|D|U|485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOO_021 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.0788

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8VOO|1|D|G|446
8VOO|1|D|G|447
8VOO|1|D|A|448
8VOO|1|D|G|449
8VOO|1|D|G|450
*
8VOO|1|D|C|483
8VOO|1|D|G|484
8VOO|1|D|U|485
8VOO|1|D|U|486
8VOO|1|D|A|487
8VOO|1|D|C|488

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain U

30S ribosomal protein S16