IL_8VOO_023

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOO_023 not in the Motif Atlas

Geometric match to IL_5J7L_024

Geometric discrepancy: 0.0556

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8VOO|1|D|C|504
8VOO|1|D|G|505
8VOO|1|D|G|506
8VOO|1|D|C|507
8VOO|1|D|U|508
8VOO|1|D|A|509
8VOO|1|D|A|510
8VOO|1|D|C|511
*
8VOO|1|D|G|540
8VOO|1|D|G|541

Current chains

Chain D

16S rRNA

Nearby chains

Chain 7

mRNA with 39 nt long spacer

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12