IL_8VOO_038

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

8VOO|1|D|G|926

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOO_038 not in the Motif Atlas

Geometric match to IL_4LFB_036

Geometric discrepancy: 0.1223

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

8VOO|1|D|G|925
8VOO|1|D|G|926
8VOO|1|D|G|927
*
8VOO|1|D|U|1390
8VOO|1|D|U|1391

Current chains

Chain D

16S rRNA

Nearby chains

Chain 7

mRNA with 39 nt long spacer

Chain B

Transfer RNA; tRNA