IL_8VOO_043

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

8VOO|1|D|U|1030, 8VOO|1|D|C|1031, 8VOO|1|D|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOO|1|D|G|1003
8VOO|1|D|A|1004
8VOO|1|D|A|1005
8VOO|1|D|G|1006
*
8VOO|1|D|U|1023
8VOO|1|D|G|1024
8VOO|1|D|U|1025
8VOO|1|D|G|1026
8VOO|1|D|C|1027
8VOO|1|D|C|1028
8VOO|1|D|U|1029
8VOO|1|D|U|1030
8VOO|1|D|C|1031
8VOO|1|D|G|1032
8VOO|1|D|G|1033
8VOO|1|D|G|1034
8VOO|1|D|A|1035
8VOO|1|D|A|1036
8VOO|1|D|C|1037

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14