IL_8VOO_070

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

8VOO|1|a|G|277

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOO_070 not in the Motif Atlas

Geometric match to IL_5J7L_253

Geometric discrepancy: 0.1755

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8VOO|1|a|C|274
8VOO|1|a|C|275
8VOO|1|a|U|276
8VOO|1|a|G|277
8VOO|1|a|A|278
8VOO|1|a|A|279
8VOO|1|a|U|280
8VOO|1|a|C|281
*
8VOO|1|a|G|359
8VOO|1|a|U|360
8VOO|1|a|G|361
8VOO|1|a|A|362
8VOO|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains