IL_8VOO_072

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

8VOO|1|a|A|504, 8VOO|1|a|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOO_072 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.0676

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

8VOO|1|a|G|481
8VOO|1|a|A|482
8VOO|1|a|A|483
8VOO|1|a|C|484
*
8VOO|1|a|G|496
8VOO|1|a|A|497
8VOO|1|a|G|498
8VOO|1|a|U|499
8VOO|1|a|G|500
8VOO|1|a|A|501
8VOO|1|a|A|502
8VOO|1|a|A|503
8VOO|1|a|A|504
8VOO|1|a|A|505
8VOO|1|a|G|506
8VOO|1|a|A|507
8VOO|1|a|A|508
8VOO|1|a|C|509

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 3

50S ribosomal protein L24