IL_8VOO_084

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8VOO|1|a|U|846, 8VOO|1|a|U|931

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOO_084 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.1161

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

8VOO|1|a|A|844
8VOO|1|a|A|845
8VOO|1|a|U|846
8VOO|1|a|U|847
8VOO|1|a|C|848
*
8VOO|1|a|G|930
8VOO|1|a|U|931
8VOO|1|a|U|932
8VOO|1|a|A|933
8VOO|1|a|U|934

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L30