IL_8VOO_101

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCCAGACAGC*GUCGAG

Length

16 nucleotides

Bulged bases

8VOO|1|a|A|1046

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOO|1|a|C|1043
8VOO|1|a|C|1044
8VOO|1|a|C|1045
8VOO|1|a|A|1046
8VOO|1|a|G|1047
8VOO|1|a|A|1048
8VOO|1|a|C|1049
8VOO|1|a|A|1050
8VOO|1|a|G|1051
8VOO|1|a|C|1052
*
8VOO|1|a|G|1107
8VOO|1|a|U|1108
8VOO|1|a|C|1109
8VOO|1|a|G|1110
8VOO|1|a|A|1111
8VOO|1|a|G|1112

Current chains

Chain a

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L10

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36