IL_8VOO_103

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

8VOO|1|a|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOO_103 not in the Motif Atlas

Geometric match to IL_3OXE_003

Geometric discrepancy: 0.1854

The information below is about IL_3OXE_003

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

8VOO|1|a|G|1087
8VOO|1|a|A|1088
8VOO|1|a|A|1089
8VOO|1|a|A|1090
*
8VOO|1|a|U|1101
8VOO|1|a|C|1102

Current chains

Chain a

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L11

Chain q

50S ribosomal protein L36