IL_8VOO_130

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8VOO|1|a|U|1714

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOO_130 not in the Motif Atlas

Geometric match to IL_5J7L_309

Geometric discrepancy: 0.1182

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8VOO|1|a|U|1712
8VOO|1|a|A|1713
8VOO|1|a|U|1714
8VOO|1|a|G|1715
8VOO|1|a|U|1716
8VOO|1|a|A|1717
8VOO|1|a|G|1718
*
8VOO|1|a|U|1742
8VOO|1|a|G|1743
8VOO|1|a|A|1744
8VOO|1|a|A|1745
8VOO|1|a|A|1746

Current chains

Chain a

23S rRNA

Nearby chains