IL_8VOQ_022

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOQ_022 not in the Motif Atlas

Geometric match to IL_5J7L_024

Geometric discrepancy: 0.0447

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8VOQ|1|D|C|504
8VOQ|1|D|G|505
8VOQ|1|D|G|506
8VOQ|1|D|C|507
8VOQ|1|D|U|508
8VOQ|1|D|A|509
8VOQ|1|D|A|510
8VOQ|1|D|C|511
*
8VOQ|1|D|G|540
8VOQ|1|D|G|541

Current chains

Chain D

16S rRNA

Nearby chains

Chain 7

mRNA with 39 nt long spacer

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12