IL_8VOQ_069

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

8VOQ|1|a|A|504, 8VOQ|1|a|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOQ_069 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.0631

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

8VOQ|1|a|G|481
8VOQ|1|a|A|482
8VOQ|1|a|A|483
8VOQ|1|a|C|484
*
8VOQ|1|a|G|496
8VOQ|1|a|A|497
8VOQ|1|a|G|498
8VOQ|1|a|U|499
8VOQ|1|a|G|500
8VOQ|1|a|A|501
8VOQ|1|a|A|502
8VOQ|1|a|A|503
8VOQ|1|a|A|504
8VOQ|1|a|A|505
8VOQ|1|a|G|506
8VOQ|1|a|A|507
8VOQ|1|a|A|508
8VOQ|1|a|C|509

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 3

50S ribosomal protein L24