IL_8VOQ_077
3D structure
- PDB id
- 8VOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.3 Å
Loop
- Sequence
- UGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VOQ_077 not in the Motif Atlas
- Geometric match to IL_9DFE_019
- Geometric discrepancy: 0.0886
- The information below is about IL_9DFE_019
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.1
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
8VOQ|1|a|U|703
8VOQ|1|a|G|704
8VOQ|1|a|A|705
8VOQ|1|a|A|706
8VOQ|1|a|G|707
*
8VOQ|1|a|U|724
8VOQ|1|a|G|725
8VOQ|1|a|G|726
8VOQ|1|a|A|727
8VOQ|1|a|G|728
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain h
- 50S ribosomal protein L2
Coloring options: