IL_8VOQ_113

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

UG*CAUCAG

Length

8 nucleotides

Bulged bases

8VOQ|1|a|U|1584

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOQ_113 not in the Motif Atlas

Geometric match to IL_5J7L_294

Geometric discrepancy: 0.2673

The information below is about IL_5J7L_294

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87211.1

Basepair signature

cWW-cSW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8VOQ|1|a|U|1415
8VOQ|1|a|G|1416
*
8VOQ|1|a|C|1582
8VOQ|1|a|A|1583
8VOQ|1|a|U|1584
8VOQ|1|a|C|1585
8VOQ|1|a|A|1586
8VOQ|1|a|G|1587

Current chains

Chain a

23S rRNA

Nearby chains