IL_8VOQ_151

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

8VOQ|1|a|U|2402

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOQ_151 not in the Motif Atlas

Geometric match to IL_9AXU_122

Geometric discrepancy: 0.3427

The information below is about IL_9AXU_122

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8VOQ|1|a|U|2401
8VOQ|1|a|U|2402
8VOQ|1|a|C|2403
*
8VOQ|1|a|G|2414
8VOQ|1|a|G|2415

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L33

Chain o

50S ribosomal protein L35

Chain u

50S ribosomal protein L15