IL_8VOS_020

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

8VOS|1|D|U|485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOS_020 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.0652

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8VOS|1|D|G|446
8VOS|1|D|G|447
8VOS|1|D|A|448
8VOS|1|D|G|449
8VOS|1|D|G|450
*
8VOS|1|D|C|483
8VOS|1|D|G|484
8VOS|1|D|U|485
8VOS|1|D|U|486
8VOS|1|D|A|487
8VOS|1|D|C|488

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain U

Small ribosomal subunit protein bS16