IL_8VOS_024
3D structure
- PDB id
- 8VOS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CGCAG*UCAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VOS_024 not in the Motif Atlas
- Geometric match to IL_5J7L_027
- Geometric discrepancy: 0.0519
- The information below is about IL_5J7L_027
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
8VOS|1|D|C|580
8VOS|1|D|G|581
8VOS|1|D|C|582
8VOS|1|D|A|583
8VOS|1|D|G|584
*
8VOS|1|D|U|757
8VOS|1|D|C|758
8VOS|1|D|A|759
8VOS|1|D|G|760
8VOS|1|D|G|761
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain N
- Small ribosomal subunit protein uS8
- Chain R
- 30S ribosomal protein S12
- Chain T
- Small ribosomal subunit protein uS15
- Chain V
- Small ribosomal subunit protein uS17
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